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Methods in genomic variant calling

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WGS Variant Calling: Variant calling with GATK - Part 1 | Detailed NGS Analysis Workflow

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BroadE: GATK - Introduction to Germline Variant Discovery

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NGS - Genome Variant analysis – Variant calling (3 of 5)

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BroadE: GATK - Introduction to Variant Discovery

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Small-Variant Calling and Annotation

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BroadE: GATK/Variant calling and joint genotyping (2015)

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MPG Primer: High throughput sequencing and variant calling pipelines (2017)

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W8: Variant Calling with GATK - Day 1

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Matt Attreed: How to generate assemblies and call variants

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Variant calling tutorial

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Small Variant Calling and Annotation

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Variant calling with GATK

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Variant Call Format | Common Conventions

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Kishwar Shafin - Accurate variant calling and de novo assembly with nanopore reads

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